which one is forward primer and which one is reverse primer

Biochemistry
9th Edition
ISBN:9781319114671
Author:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Publisher:Lubert Stryer, Jeremy M. Berg, John L. Tymoczko, Gregory J. Gatto Jr.
Chapter1: Biochemistry: An Evolving Science
Section: Chapter Questions
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I want to ask which one is forward primer and which one is reverse primer
QuikChange II
3. Find your DNA sequence by pressing
Load a file from your hard-drive:
No file selected
4. Load it.
DNA: change
nucleotide(s) to:
or
Upload Now -or- Upload Translated
or specify a DNA region to translate from.
Select up to seven nucleotides that you want to change O
Site 1
Site 2
U1a
agilent.com/store/ +
Insert between two checked nucleotides
10 a
19 g
28 a
37 g
21
11 a
Browse
20 a
29 c
38 t
or
O Delete a region between two checked nucleotides (Note: two checked nucleotides will not be deleted)
c289c_g290a_c291t
3g
12 a
21 a
30 t
39 c
48 t
57 a
66 t
75 g
841
931
46 c
47 t
55 t
56 t
64 g
65 a
73 g
749
82 t
831
91 a
92 g
Finally, obtain your designed primer sequences.
Design Primers
Clear this form to load a new sequence:
Clear Input
Primer sequences:
Primer Name
c289c_g290a_c291t
Oligonucleotide information:
Primer Name
c289c_g290a_c2911
Primer-template duplexes:
Primer Name
Or, paste plain text or FASTA-formatted DNA sequence in the box below:
atggctagcaaaggagaagaacttttcactggagttgtcccaattcttgttgaattaga
tggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgctacat
acggaaagettaccettaaatttatttgcactactggaaaactacctgttccatggcca
acacttgtcactactttctcttatggtgttcaatgcttttcccgttatccggatcatatgaa
acggcatgactttttcaagagtgccatgcccgaaggttatgtacaggaacgcactata
tctttcaaagatgacgggaactacaagacgcgtgctgaagtcaagtttgaaggtgat
accettattaatcatatcoaattaaaaaatattaattttaaaaaaaataaaaacattctc
Length (nt.)
47
47
Primer-Template Duplex
tgecatgeccgaag
3-gtacgE
5-catgeo
|||||
ABOUT AGILENT RESOURCES
acggta
Help in choosing a mutagenesis kit
gtacggget
CONNECT WITH AGILENT f in
49
13 g
22 c
31 g
40 c
49 g
58 g
67 g
76 c
Site 3
851
94 g
▾
Tm
78.59°C
78.59°C
to
L5c
Site 4
V
14 g
23 t
O 32 g
41 c
50 t
59 a
68 t
77 a
86 c
95 g
Primer Sequence (5' to 3)
5-catctttgaaagatatagtatgttcctgtacataaccttcgggcatg-3
5-catgcccgaaggttatgtacaggaacatactatatctttcaaagatg-3
Y
Site 5
AGILENT
SOCIAL HUB
SHOPPING TOOLS SUPPORT &
61
15 a
241
33 a
42 a
51 1
60 t
69t
78 c
87 t
96 a
Duplex Energy at 68 "C
-48.57 kcal/mole
-49.09 kcal/mole
Site 6
7a
16g
251
34 g
43 a
5 :
52 g
61 g
70 a
79 a
88 g
197 g
Upload Translated Region
Site 7
L8g
17 a
26t
35 t
441
53 a
62 g
71 a
80 a
89 t
98 a
aagatgacg
||||||
tttctac-51
tg-31
Y
etge
9c
18
27
36
45
54
63
72
81
Energy Cost of Mismatches
11.31%
12.42%
90
99
Follow Us
Amiler
Transcribed Image Text:QuikChange II 3. Find your DNA sequence by pressing Load a file from your hard-drive: No file selected 4. Load it. DNA: change nucleotide(s) to: or Upload Now -or- Upload Translated or specify a DNA region to translate from. Select up to seven nucleotides that you want to change O Site 1 Site 2 U1a agilent.com/store/ + Insert between two checked nucleotides 10 a 19 g 28 a 37 g 21 11 a Browse 20 a 29 c 38 t or O Delete a region between two checked nucleotides (Note: two checked nucleotides will not be deleted) c289c_g290a_c291t 3g 12 a 21 a 30 t 39 c 48 t 57 a 66 t 75 g 841 931 46 c 47 t 55 t 56 t 64 g 65 a 73 g 749 82 t 831 91 a 92 g Finally, obtain your designed primer sequences. Design Primers Clear this form to load a new sequence: Clear Input Primer sequences: Primer Name c289c_g290a_c291t Oligonucleotide information: Primer Name c289c_g290a_c2911 Primer-template duplexes: Primer Name Or, paste plain text or FASTA-formatted DNA sequence in the box below: atggctagcaaaggagaagaacttttcactggagttgtcccaattcttgttgaattaga tggtgatgttaatgggcacaaattttctgtcagtggagagggtgaaggtgatgctacat acggaaagettaccettaaatttatttgcactactggaaaactacctgttccatggcca acacttgtcactactttctcttatggtgttcaatgcttttcccgttatccggatcatatgaa acggcatgactttttcaagagtgccatgcccgaaggttatgtacaggaacgcactata tctttcaaagatgacgggaactacaagacgcgtgctgaagtcaagtttgaaggtgat accettattaatcatatcoaattaaaaaatattaattttaaaaaaaataaaaacattctc Length (nt.) 47 47 Primer-Template Duplex tgecatgeccgaag 3-gtacgE 5-catgeo ||||| ABOUT AGILENT RESOURCES acggta Help in choosing a mutagenesis kit gtacggget CONNECT WITH AGILENT f in 49 13 g 22 c 31 g 40 c 49 g 58 g 67 g 76 c Site 3 851 94 g ▾ Tm 78.59°C 78.59°C to L5c Site 4 V 14 g 23 t O 32 g 41 c 50 t 59 a 68 t 77 a 86 c 95 g Primer Sequence (5' to 3) 5-catctttgaaagatatagtatgttcctgtacataaccttcgggcatg-3 5-catgcccgaaggttatgtacaggaacatactatatctttcaaagatg-3 Y Site 5 AGILENT SOCIAL HUB SHOPPING TOOLS SUPPORT & 61 15 a 241 33 a 42 a 51 1 60 t 69t 78 c 87 t 96 a Duplex Energy at 68 "C -48.57 kcal/mole -49.09 kcal/mole Site 6 7a 16g 251 34 g 43 a 5 : 52 g 61 g 70 a 79 a 88 g 197 g Upload Translated Region Site 7 L8g 17 a 26t 35 t 441 53 a 62 g 71 a 80 a 89 t 98 a aagatgacg |||||| tttctac-51 tg-31 Y etge 9c 18 27 36 45 54 63 72 81 Energy Cost of Mismatches 11.31% 12.42% 90 99 Follow Us Amiler
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